Detailed information of SNP:
|
SNP ID:
sf0519612601(Gbrowse)
Chromosome: chr05 Position: 19612601 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 95.14% | 4.86% |
| All Indica | 764 | 93.06% | 6.94% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 364 | 94.51% | 5.49% |
| Indica II | 205 | 91.71% | 8.29% |
| Indica Intermediate | 195 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519612601 | G->A | LOC_Os05g33490(LOC_Os05g33490.1) | Non-Synonymous SNP |