Detailed information of SNP:
|
SNP ID:
sf0519635610(Gbrowse)
Chromosome: chr05 Position: 19635610 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 53.53% | 46.47% |
| All Indica | 796 | 69.35% | 30.65% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 81.77% | 18.23% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519635610 | A->G | LOC_Os05g33530(LOC_Os05g33530.1) | Non-Synonymous SNP |