Detailed information of SNP:
|
SNP ID:
sf0519641875(Gbrowse)
Chromosome: chr05 Position: 19641875 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.66% | 39.34% |
| All Indica | 797 | 56.46% | 43.54% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 74.60% | 25.40% |
| Indica II | 212 | 41.51% | 58.49% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519641875 | C->T | LOC_Os05g33550(LOC_Os05g33550.1) | INTRON |