Detailed information of SNP:
|
SNP ID:
sf0519652662(Gbrowse)
Chromosome: chr05 Position: 19652662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 69.62% | 30.38% |
| All Indica | 789 | 47.02% | 52.98% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 28.03% | 71.97% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 207 | 64.73% | 35.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519652662 | G->A | LOC_Os05g33560(LOC_Os05g33560.1) | SNPs that introduce stop codons |