Detailed information of SNP:
|
SNP ID:
sf0519685243(Gbrowse)
Chromosome: chr05 Position: 19685243 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.55% | 45.45% |
| All Indica | 799 | 69.84% | 30.16% |
| All Japonica | 497 | 21.73% | 78.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519685243 | G->A | INTERGENIC | None |