Detailed information of SNP:
|
SNP ID:
sf0519687576(Gbrowse)
Chromosome: chr05 Position: 19687576 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.08% | 35.92% |
| All Indica | 798 | 60.65% | 39.35% |
| All Japonica | 496 | 79.23% | 20.77% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 56.68% | 43.32% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519687576 | A->G | INTERGENIC | None |