Detailed information of SNP:
|
SNP ID:
sf0519693055(Gbrowse)
Chromosome: chr05 Position: 19693055 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 62.53% | 37.47% |
| All Indica | 794 | 58.82% | 41.18% |
| All Japonica | 486 | 78.40% | 21.60% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 54.84% | 45.16% |
| Indica II | 211 | 54.50% | 45.50% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 326 | 98.47% | 1.53% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519693055 | C->T | INTERGENIC | None |