Detailed information of SNP:
|
SNP ID:
sf0519706515(Gbrowse)
Chromosome: chr05 Position: 19706515 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.32% | 23.68% |
| All Indica | 799 | 59.07% | 40.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519706515 | G->A | LOC_Os05g33610(LOC_Os05g33610.3) | UTR_5_PRIME |
| sf0519706515 | G->A | LOC_Os05g33610(LOC_Os05g33610.1) | UTR_5_PRIME |
| sf0519706515 | G->A | LOC_Os05g33610(LOC_Os05g33610.2) | UTR_5_PRIME |