Detailed information of SNP:
|
SNP ID:
sf0519706894(Gbrowse)
Chromosome: chr05 Position: 19706894 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.50% | 37.50% |
| All Indica | 797 | 57.34% | 42.66% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 45.19% | 54.81% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519706894 | A->T | LOC_Os05g33610(LOC_Os05g33610.3) | INTRON |
| sf0519706894 | A->T | LOC_Os05g33610(LOC_Os05g33610.1) | INTRON |
| sf0519706894 | A->T | LOC_Os05g33610(LOC_Os05g33610.2) | INTRON |