Detailed information of SNP:
|
SNP ID:
sf0519727872(Gbrowse)
Chromosome: chr05 Position: 19727872 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1200 | 54.75% | 45.25% |
| All Indica | 709 | 51.48% | 48.52% |
| All Japonica | 375 | 69.87% | 30.13% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 332 | 38.25% | 61.75% |
| Indica II | 198 | 60.61% | 39.39% |
| Indica Intermediate | 179 | 65.92% | 34.08% |
| Temperate Japonica | 227 | 96.04% | 3.96% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 57 | 71.93% | 28.07% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519727872 | C->T | INTERGENIC | None |