Detailed information of SNP:
|
SNP ID:
sf0519751667(Gbrowse)
Chromosome: chr05 Position: 19751667 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 89.14% | 10.86% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 480 | 84.38% | 15.62% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 79 | 18.99% | 81.01% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 6 | 33.33% | 66.67% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519751667 | G->A | INTERGENIC | None |