Detailed information of SNP:
|
SNP ID:
sf0519754561(Gbrowse)
Chromosome: chr05 Position: 19754561 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 77.97% | 22.03% |
| All Indica | 769 | 61.38% | 38.62% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 353 | 54.11% | 45.89% |
| Indica II | 210 | 60.00% | 40.00% |
| Indica Intermediate | 206 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519754561 | A->C | LOC_Os05g33680(LOC_Os05g33680.1) | INTRON |