Detailed information of SNP:
|
SNP ID:
sf0519760857(Gbrowse)
Chromosome: chr05 Position: 19760857 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.13% | 26.87% |
| All Indica | 798 | 53.63% | 46.37% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 42.51% | 57.49% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519760857 | G->A | INTERGENIC | None |