Detailed information of SNP:
|
SNP ID:
sf0519770060(Gbrowse)
Chromosome: chr05 Position: 19770060 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.56% | 34.44% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519770060 | C->T | INTERGENIC | None |