Detailed information of SNP:
|
SNP ID:
sf0519774124(Gbrowse)
Chromosome: chr05 Position: 19774124 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 86.91% | 13.09% |
| All Indica | 788 | 78.30% | 21.70% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 89.54% | 10.46% |
| Indica II | 211 | 62.09% | 37.91% |
| Indica Intermediate | 204 | 74.51% | 25.49% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519774124 | C->T | LOC_Os05g33700(LOC_Os05g33700.1) | INTRON |