Detailed information of SNP:
|
SNP ID:
sf0519817114(Gbrowse)
Chromosome: chr05 Position: 19817114 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 90.42% | 9.58% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519817114 | T->C | LOC_Os05g33750(LOC_Os05g33750.1) | Non-Synonymous SNP |