Detailed information of SNP:
|
SNP ID:
sf0519826506(Gbrowse)
Chromosome: chr05 Position: 19826506 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 62.34% | 37.66% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 411 | 2.19% | 97.81% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 18 | 22.22% | 77.78% |
| Japonica Intermediate | 59 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519826506 | T->A | INTERGENIC | None |