Detailed information of SNP:
|
SNP ID:
sf0519830332(Gbrowse)
Chromosome: chr05 Position: 19830332 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.84% | 32.16% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519830332 | G->A | INTERGENIC | None |