Detailed information of SNP:
|
SNP ID:
sf0519840543(Gbrowse)
Chromosome: chr05 Position: 19840543 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 95.86% | 4.14% |
| All Indica | 787 | 96.44% | 3.56% |
| All Japonica | 484 | 96.69% | 3.31% |
| Aus | 53 | 79.25% | 20.75% |
| Indica I | 368 | 96.47% | 3.53% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 82 | 82.93% | 17.07% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519840543 | C->T | INTERGENIC | None |