Detailed information of SNP:
|
SNP ID:
sf0519847224(Gbrowse)
Chromosome: chr05 Position: 19847224 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 58.47% | 41.53% |
| All Indica | 774 | 93.15% | 6.85% |
| All Japonica | 401 | 2.00% | 98.00% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 365 | 95.62% | 4.38% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 200 | 89.50% | 10.50% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 9 | 22.22% | 77.78% |
| Japonica Intermediate | 58 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519847224 | T->C | INTERGENIC | None |