Detailed information of SNP:
|
SNP ID:
sf0519858951(Gbrowse)
Chromosome: chr05 Position: 19858951 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 57.77% | 42.23% |
| All Indica | 789 | 80.10% | 19.90% |
| All Japonica | 495 | 20.40% | 79.60% |
| Aus | 62 | 87.10% | 12.90% |
| Indica I | 365 | 89.04% | 10.96% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519858951 | C->T | INTERGENIC | None |