Detailed information of SNP:
|
SNP ID:
sf0519976555(Gbrowse)
Chromosome: chr05 Position: 19976555 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.64% | 26.36% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 30.38% | 69.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519976555 | A->G | LOC_Os05g33940(LOC_Os05g33940.1) | Non-Synonymous SNP |