Detailed information of SNP:
|
SNP ID:
sf0519979095(Gbrowse)
Chromosome: chr05 Position: 19979095 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.24% | 12.76% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519979095 | T->C | INTERGENIC | None |