Detailed information of SNP:
|
SNP ID:
sf0520003023(Gbrowse)
Chromosome: chr05 Position: 20003023 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1318 | 95.68% | 4.32% |
| All Indica | 706 | 92.49% | 7.51% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 342 | 94.74% | 5.26% |
| Indica II | 178 | 88.76% | 11.24% |
| Indica Intermediate | 186 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520003023 | A->G | LOC_Os05g33980(LOC_Os05g33980.1) | Non-Synonymous SNP |