Detailed information of SNP:
|
SNP ID:
sf0520019968(Gbrowse)
Chromosome: chr05 Position: 20019968 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.83% | 41.17% |
| All Indica | 798 | 87.97% | 12.03% |
| All Japonica | 496 | 20.56% | 79.44% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520019968 | G->A | INTERGENIC | None |