Detailed information of SNP:
|
SNP ID:
sf0520021279(Gbrowse)
Chromosome: chr05 Position: 20021279 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 56.95% | 43.05% |
| All Indica | 784 | 84.95% | 15.05% |
| All Japonica | 496 | 20.36% | 79.64% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 367 | 81.47% | 18.53% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520021279 | G->A | INTERGENIC | None |