Detailed information of SNP:



SNP ID: sf0520037152(Gbrowse)

Chromosome: chr05

Position: 20037152
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1394 97.92% 2.08%
All Indica799 100.00% 0.00%
All Japonica497 100.00% 0.00%
Aus44 38.64% 61.36%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 95.00% 5.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0520037152 C->T LOC_Os05g34030(LOC_Os05g34030.1) Non-Synonymous SNP