Detailed information of SNP:
|
SNP ID:
sf0520037152(Gbrowse)
Chromosome: chr05 Position: 20037152 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 97.92% | 2.08% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 44 | 38.64% | 61.36% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520037152 | C->T | LOC_Os05g34030(LOC_Os05g34030.1) | Non-Synonymous SNP |