Detailed information of SNP:
|
SNP ID:
sf0520038097(Gbrowse)
Chromosome: chr05 Position: 20038097 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.90% | 42.10% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520038097 | C->A | LOC_Os05g34030(LOC_Os05g34030.1) | Synonymous |