Detailed information of SNP:



SNP ID: sf0520056433(Gbrowse)

Chromosome: chr05

Position: 20056433
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1419 92.88% 7.12%
All Indica799 99.62% 0.38%
All Japonica497 92.96% 7.04%
Aus67 13.43% 86.57%
Indica I375 99.47% 0.53%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 90.15% 9.85%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0520056433 T->A INTERGENIC None