Detailed information of SNP:
|
SNP ID:
sf0520068689(Gbrowse)
Chromosome: chr05 Position: 20068689 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1261 | 52.97% | 47.03% |
| All Indica | 652 | 96.47% | 3.53% |
| All Japonica | 495 | 3.43% | 96.57% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 297 | 97.64% | 2.36% |
| Indica II | 180 | 95.56% | 4.44% |
| Indica Intermediate | 175 | 95.43% | 4.57% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 36 | 41.67% | 58.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520068689 | C->T | INTERGENIC | None |