Detailed information of SNP:
|
SNP ID:
sf0520115627(Gbrowse)
Chromosome: chr05 Position: 20115627 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.09% | 12.91% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520115627 | G->A | INTERGENIC | None |