Detailed information of SNP:
|
SNP ID:
sf0520116319(Gbrowse)
Chromosome: chr05 Position: 20116319 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.96% | 13.04% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520116319 | T->C | LOC_Os05g34130(LOC_Os05g34130.1) | Non-Synonymous SNP |