Detailed information of SNP:
|
SNP ID:
sf0520209888(Gbrowse)
Chromosome: chr05 Position: 20209888 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 51.72% | 48.28% |
| All Indica | 779 | 88.96% | 11.04% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 356 | 86.80% | 13.20% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520209888 | G->A | INTERGENIC | None |