Detailed information of SNP:
|
SNP ID:
sf0520233814(Gbrowse)
Chromosome: chr05 Position: 20233814 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 98.97% | 1.03% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 441 | 97.28% | 2.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 43 | 76.74% | 23.26% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520233814 | C->T | INTERGENIC | None |