Detailed information of SNP:
|
SNP ID:
sf0520233816(Gbrowse)
Chromosome: chr05 Position: 20233816 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 57.71% | 42.29% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520233816 | C->G | INTERGENIC | None |