Detailed information of SNP:
|
SNP ID:
sf0520238009(Gbrowse)
Chromosome: chr05 Position: 20238009 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.55% | 35.45% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520238009 | T->C | INTERGENIC | None |