Detailed information of SNP:
|
SNP ID:
sf0520274868(Gbrowse)
Chromosome: chr05 Position: 20274868 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 62.64% | 37.36% |
| All Indica | 796 | 94.97% | 5.03% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520274868 | A->G | LOC_Os05g34330(LOC_Os05g34330.1) | INTRON |