Detailed information of SNP:
|
SNP ID:
sf0520296129(Gbrowse)
Chromosome: chr05 Position: 20296129 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.22% | 46.78% |
| All Indica | 793 | 90.79% | 9.21% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 371 | 92.45% | 7.55% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520296129 | C->T | LOC_Os05g34350(LOC_Os05g34350.1) | INTRON |