Detailed information of SNP:
|
SNP ID:
sf0520300642(Gbrowse)
Chromosome: chr05 Position: 20300642 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.69% | 48.31% |
| All Indica | 798 | 87.59% | 12.41% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520300642 | C->T | LOC_Os05g34350(LOC_Os05g34350.1) | Synonymous |