Detailed information of SNP:
|
SNP ID:
sf0520301299(Gbrowse)
Chromosome: chr05 Position: 20301299 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 68.67% | 31.33% |
| All Indica | 794 | 96.85% | 3.15% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520301299 | C->T | LOC_Os05g34350(LOC_Os05g34350.1) | Synonymous |