Detailed information of SNP:
|
SNP ID:
sf0520303736(Gbrowse)
Chromosome: chr05 Position: 20303736 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.10% | 35.90% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520303736 | G->A | INTERGENIC | None |