Detailed information of SNP:
|
SNP ID:
sf0520305561(Gbrowse)
Chromosome: chr05 Position: 20305561 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.48% | 29.52% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 21.46% | 78.54% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520305561 | C->T | LOC_Os05g34370(LOC_Os05g34370.1) | Synonymous |