Detailed information of SNP:
|
SNP ID:
sf0520329653(Gbrowse)
Chromosome: chr05 Position: 20329653 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 92.09% | 7.91% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 395 | 75.19% | 24.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 250 | 67.60% | 32.40% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 52 | 71.15% | 28.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520329653 | C->T | INTERGENIC | None |