Detailed information of SNP:
|
SNP ID:
sf0520336111(Gbrowse)
Chromosome: chr05 Position: 20336111 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 54.40% | 45.60% |
| All Indica | 790 | 74.05% | 25.95% |
| All Japonica | 497 | 19.72% | 80.28% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 72.04% | 27.96% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 206 | 71.36% | 28.64% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520336111 | G->A | LOC_Os05g34420(LOC_Os05g34420.1) | Non-Synonymous SNP |