Detailed information of SNP:
|
SNP ID:
sf0520341242(Gbrowse)
Chromosome: chr05 Position: 20341242 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 50.64% | 49.36% |
| All Indica | 792 | 86.36% | 13.64% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 371 | 87.87% | 12.13% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520341242 | C->T | LOC_Os05g34440(LOC_Os05g34440.1) | INTRON |