Detailed information of SNP:
|
SNP ID:
sf0520353281(Gbrowse)
Chromosome: chr05 Position: 20353281 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.81% | 13.19% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520353281 | C->A | LOC_Os05g34450(LOC_Os05g34450.1) | INTRON |