Detailed information of SNP:
|
SNP ID:
sf0520409891(Gbrowse)
Chromosome: chr05 Position: 20409891 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.44% | 37.56% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 20.72% | 79.28% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520409891 | G->A | INTERGENIC | None |