Detailed information of SNP:
|
SNP ID:
sf0520440569(Gbrowse)
Chromosome: chr05 Position: 20440569 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 65.60% | 34.40% |
| All Indica | 790 | 78.35% | 21.65% |
| All Japonica | 497 | 52.52% | 47.48% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 370 | 69.73% | 30.27% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520440569 | A->G | INTERGENIC | None |