Detailed information of SNP:
|
SNP ID:
sf0520504951(Gbrowse)
Chromosome: chr05 Position: 20504951 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 79.14% | 20.86% |
| All Indica | 799 | 77.47% | 22.53% |
| All Japonica | 497 | 79.68% | 20.32% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 65.87% | 34.13% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520504951 | C->T | INTERGENIC | None |