Detailed information of SNP:
|
SNP ID:
sf0520511658(Gbrowse)
Chromosome: chr05 Position: 20511658 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1329 | 73.97% | 26.03% |
| All Indica | 783 | 73.56% | 26.44% |
| All Japonica | 426 | 71.60% | 28.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 371 | 64.69% | 35.31% |
| Indica II | 209 | 82.78% | 17.22% |
| Indica Intermediate | 203 | 80.30% | 19.70% |
| Temperate Japonica | 297 | 64.65% | 35.35% |
| Tropical Japonica | 75 | 96.00% | 4.00% |
| Japonica Intermediate | 54 | 75.93% | 24.07% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520511658 | T->C | INTERGENIC | None |